rs6395379 SNP Detail

Summary

• ID
  rs6395379
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151277865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGC AGCACAGAAA GGGGTGCTGC
  Y
  GCATTCAGTG TGGGCCTTCA CAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8801560	WI_WGS_4_146589803	WI	MOUSE	f	SNP	T	C
ss321432053	CHEV_4_150567517	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6395379					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151277865 () rs orientation: forward

Symbol	Name	Function Class
Camta1	calmodulin binding transcription activator 1	Intron
Rr605535	regulatory region 605535	681 bp proximal
Rr605536	regulatory region 605536	691 bp proximal