rs6395344 SNP Detail

Summary

• ID
  rs6395344
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5508962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTTAACT GAGTTTGAAA
  TACACCAGTT ACTGTCTACT CTGTAATTTT GTGTTTTGAG GGTACTGATG TTTTCTTACA
  TGTAAAGACT GGGTCAGATT TGTCTGAGAT AAACTAGAAT ATCTTTGTAA CCATCCTGGC
  AAGACTGAAA ATATTCTAGA GACACTGGTC CCCTCCTTTT GACTCTCAGA CGATTGAAAC
  S
  ATGATCCCCA AGGAATTGGG ATTTCTGCTG GAATCGGTTG GGACAAAAAA GAAGCTGAAC
  TCCAGTGCCA GCCATAGGGA TATATCTCCC AGAAAGAGAT TTCGCACAGT TCTGAAGAGG
  TTTTTGGACC ACCTGGCAGG CAAGACAGGG GCTGGCTCAA AATGAGGACC CACCCAAACT
  TGATTATGCT CTTATTTCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8801525	WI_WGS_6_5233841	WI	MOUSE	f	SNP	C	G
ss321729358	CHEV_6_5458962	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6395344					SNP	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5508962 () rs orientation: forward

Symbol	Name	Function Class
Rr406959	regulatory region 406959	within coordinates
Rr626154	regulatory region 626154	752 bp distal
Rr626155	regulatory region 626155	270 bp proximal