rs6395312 SNP Detail

Summary

• ID
  rs6395312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5508941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAACAAAGA AAACAGGCAA
  CAGTGTTAAC TGAGTTTGAA ATACACCAGT TACTGTCTAC TCTGTAATTT TGTGTTTTGA
  GGGTACTGAT GTTTTCTTAC ATGTAAAGAC TGGGTCAGAT TTGTCTGAGA TAAACTAGAA
  TATCTTTGTA ACCATCCTGG CAAGACTGAA AATATTCTAG AGACACTGGT CCCCTCCTTT
  Y
  GACTCTCAGA CGATTGAAAC CATGATCCCC AAGGAATTGG GATTTCTGCT GGAATCGGTT
  GGGACAAAAA AGAAGCTGAA CTCCAGTGCC AGCCATAGGG ATATATCTCC CAGAAAGAGA
  TTTCGCACAG TTCTGAAGAG GTTTTTGGAC CACCTGGCAG GCAAGACAGG GGCTGGCTCA
  AAATGAGGAC CCACCCAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8801493	WI_WGS_6_5233820	WI	MOUSE	f	SNP	T	C
ss321729357	CHEV_6_5458941	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6395312					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5508941 () rs orientation: forward

Symbol	Name	Function Class
Rr406959	regulatory region 406959	within coordinates
Rr626154	regulatory region 626154	731 bp distal
Rr626155	regulatory region 626155	291 bp proximal