rs6394664 SNP Detail

Summary

• ID
  rs6394664
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148644416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGTGTGA GTTGCAATGA
  TGTATGCTGG GAAATTTCCA TCTACCATTG TGTGGTCACC ACAGCGGCTA GGAGAACTCT
  CAAAGGCCAA GAGAAGTTAC AGGAAGCCAA ATAAAATGTT CCTACTCTAG ACACTTAGCA
  CCTCATTATC TTCCAATAAT ATAAAGATTA GAAAAATGAA ATATATATAA AATCGTTAGT
  R
  GAAAATACAT CAAGAAAATG CACCGCCCAC GGGATAAGCA AAAGATAGAA CATACACTCT
  TCTAGAAAAA ATATTTACAT TAGTCAAGAA AGCACAATTA ACCAAACTAA TTAAAGTATC
  ATTCTGTGAG CCAAGTTCTT TAATTTCAAG AATAGTAACA CTGTTACGAG TGCTTCAAGC
  ATAAATGAAT TTGAATAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8800841	WI_WGS_3_149474674	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6394664					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148644416 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587231	regulatory region 587231	544 bp proximal