rs6394483 SNP Detail

Summary

• ID
  rs6394483
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27246188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACGA GCACTGCCTC TCTCAGATCC
  Y
  GTGCTTCGCA TGTGATTCAT TGCGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8800660	WI_WGS_3_27016747	WI	MOUSE	f	SNP								T		C
ss45474184	mCV27552818	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					T			C
ss60380379	NES15883640	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	C	C		C		C	C	T		C	C	C	C		C
ss134702632	ENSMUSSNP1590708	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C								C
ss320688931	CHEV_3_27090961	CHEVERUD	SCREENING_POP	f	SNP														C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6394483					SNP	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380379	NES15883640	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27246188 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr374718	regulatory region 374718			833 bp downstream
Rr574360	regulatory region 574360			1835 bp distal
Rr574361	regulatory region 574361			807 bp distal
Rr574362	regulatory region 574362			within coordinates
Rr574363	regulatory region 574363			1748 bp proximal
Tssr28610	transcription start site region 28610			93 bp upstream
Tssr32839	transcription start site region 32839			95 bp upstream
Tssr32840	transcription start site region 32840			53 bp upstream