rs6394469 SNP Detail

Summary

• ID
  rs6394469
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76288630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAAGAAGT CTGGTAAGAT GGAACATGTA TTTAAAAGAG
  ACTGAAACCA AGAAATGGCA GTGACTAATG CGGGAGAGTT GCTGATTTCC ATAGTAAAAC
  S
  GTGTTACAGT CAAATCTGGC AAAGCTAGCA TAGACAGGAG CCATAAGGCT AACTGAACAG
  AAACTTCATT CGTGCAGAAG GGAATATAGA AAATTTTAA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8800646	WI_WGS_4_73646671	WI	MOUSE	f	SNP								G		C
ss38194793	NES09611605	PERLEGEN	MM_PANEL2	f	SNP	C		C	G	C	C	G		C		C	G	G	C	G	C	C	G
ss45631056	mCV24096191	ABI	CRAMUS_MOUSE	f	SNP		C	C					G			C
ss146587035	ENSMUSSNP309692	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C								C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6394469					SNP	C	C	C	G	C	C	G	G	C	C	C	G	G	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38194793	NES09611605	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76288630 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr376702	regulatory region 376702			within coordinates
Rr594092	regulatory region 594092			within coordinates
Rr594093	regulatory region 594093			1330 bp proximal