rs6394263 SNP Detail

Summary

• ID
  rs6394263
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5508769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAGAGAG AGCTAGCAGG
  AAGCATGGAT GTGCTAACCC TCAGTTTGAA TAGAAACCTC TGCCTCACTT GCCTGGGGTT
  CATAAGTTCT ACTTAGAAAA AAAAAAGTAA ATGTTAAAAA AAACTTTTAC ATTAGTCTTT
  TTGATATCTG ATTATTAAGA ATGTCTGTTT ACTTAACAAA GAAAACAGGC AACAGTGTTA
  M
  CTGAGTTTGA AATACACCAG TTACTGTCTA CTCTGTAATT TTGTGTTTTG AGGGTACTGA
  TGTTTTCTTA CATGTAAAGA CTGGGTCAGA TTTGTCTGAG ATAAACTAGA ATATCTTTGT
  AACCATCCTG GCAAGACTGA AAATATTCTA GAGACACTGG TCCCCTCCTT TTGACTCTCA
  GACGATTGAA ACCATGATCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8800440	WI_WGS_6_5233648	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6394263					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5508769 () rs orientation: forward

Symbol	Name	Function Class
Rr406959	regulatory region 406959	within coordinates
Rr626154	regulatory region 626154	559 bp distal
Rr626155	regulatory region 626155	463 bp proximal