rs6394026 SNP Detail

Summary

• ID
  rs6394026
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27246135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGGGGCT TTTATGGAGC
  CCACAAAAGA ACACCAGACA CAGACCTGGA GTCAGGGCTA GGTGGTACAC ACCTGTAATA
  CCAGCACTGG AGAGGTGGAG GCAGGAGGAT CAGAAGGTCA AGTCTGCATG AGACCAAGTA
  GCAGAAAGTG GCCCTGGGTA CTGGGCCTGT TCCCTCTTTA ATCTGTTAGC AAGACTGAGT
  R
  TTGACAGCAC ACTCAGTCTT TAAACATCAC GAGCACTGCC TCTCTCAGAT CCTGTGCTTC
  GCATGTGATT CATTGCGTCA CTCCAGCAAC ATGGCATTTT TCTTTATGTG ACAAGAGGAG
  AGGACTCAAA AGGAAGAAAA ATAACTTGCT CAGTATGGCA GCGCTGAGGA GGTGGGGCAG
  GTGAAGGCCA GGCTGCCTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8800203	WI_WGS_3_27016694	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6394026					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27246135 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr374718	regulatory region 374718			780 bp downstream
Rr574360	regulatory region 574360			1782 bp distal
Rr574361	regulatory region 574361			754 bp distal
Rr574362	regulatory region 574362			within coordinates
Rr574363	regulatory region 574363			1801 bp proximal
Tssr28610	transcription start site region 28610			146 bp upstream
Tssr32839	transcription start site region 32839			42 bp upstream
Tssr32840	transcription start site region 32840			within coordinates