rs6392354 SNP Detail

Summary

• ID
  rs6392354
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143448367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTT AGAACTTCTC TGGGCATACA
  K
  TTGTGTGCAC AATTATTCAG TGAGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8798529	WI_WGS_3_144257556	WI	MOUSE	f	SNP							T		G
ss51661406	NES14645629	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	T	G		G		G	G	T		G	G	G		T
ss136026108	ENSMUSSNP4869970	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								G
ss321005975	CHEV_3_143405570	CHEVERUD	SCREENING_POP	f	SNP													G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6392354					SNP	T	G	G	G	T	G	T	G	G	G	G	T	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51661406	NES14645629	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143448367 () rs orientation: forward

Symbol	Name	Function Class
Gm33867	predicted gene, 33867	672 bp upstream
Gm42705	predicted gene 42705	771 bp upstream
Rr586558	regulatory region 586558	281 bp proximal
Rr586559	regulatory region 586559	370 bp proximal
Rr586560	regulatory region 586560	782 bp proximal