rs6392131 SNP Detail

Summary

• ID
  rs6392131
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58598164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAAATAAA ATGCTGTCAC
  TGGAGAGAGA ACTAATAACG CTCTTAAGTG TCTGCGTTGA GTCCTTGTGG ACTCGAGTTC
  ATCGCAGTTA GTCAAACAAA CAAACCAAAA CAAAAACCAA ACAGCAGCTA CAACTTCTGA
  GTCCTCCGCA AGTCTGGGAA GCTGAGAGAA GGCGTGGCTT GCTGGGTTTT CTGGGCTCCC
  K
  TGCTAAGCAG GCAGTATCCG CTTCCCCTTA CAAAGCGCTC TCTCAAGTGC TCCAGATCTT
  GGGCACTGGG TCCAGGAGGA ATCCAGGACC GTTCTCGCCA AGCTCAGCGC TGGAAACCGT
  CCGCTTCCTT CCTCCACAAT CTCCACTGCC AGCTTCCCTG TTCACATTAA GCTGCCCAGG
  CTTTATAGAG CACACCCCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8798306	WI_WGS_3_59235786	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6392131					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58598164 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930593A02Rik	RIKEN cDNA 4930593A02 gene			1846 bp upstream
Cpgi13205	CpG island 13205			within coordinates
Cpgi13206	CpG island 13206			511 bp proximal
Rr367441	regulatory region 367441			within coordinates
Rr577266	regulatory region 577266			within coordinates
Rr577267	regulatory region 577267			584 bp proximal
Rr577268	regulatory region 577268			1296 bp proximal
Rr577269	regulatory region 577269			1529 bp proximal
Rr577270	regulatory region 577270			1647 bp proximal
Rr577271	regulatory region 577271			1888 bp proximal
Siah2	siah E3 ubiquitin protein ligase 2			Intron
				Noncoding-Transcript-Variant
Tssr29217	transcription start site region 29217			1747 bp upstream
Tssr29218	transcription start site region 29218			1868 bp upstream
Tssr33366	transcription start site region 33366			1265 bp downstream
Tssr33367	transcription start site region 33367			1313 bp downstream
Tssr33368	transcription start site region 33368			1648 bp downstream
Tssr33369	transcription start site region 33369			1682 bp downstream