rs6391721 SNP Detail

Summary

• ID
  rs6391721
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130731042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGATAATT TGATAAATTG TCCACTGTCA CCCACCCAAC
  TCAGCCTCCA ATCTTGTCAA AATCCTAAGT GAACACGGGC AAGATTGCGT AACTTCTCAA
  R
  CCTTGTTTTT TCTCGTCTGC AAAATGGGGC TGAAAATACC TTATAATAAA GATAATAACT
  TTGTTTTGCC TCTAGTTAGG TTGTGTTGGT TCTGAAACT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8797896	WI_WGS_3_131493672	WI	MOUSE	f	SNP		G	A
ss135902538	ENSMUSSNP7158961	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6391721					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130731042 () rs orientation: forward

Symbol	Name	Function Class
2010110G14Rik	RIKEN cDNA 2010110G14 gene	56 bp upstream
Gm64594	predicted gene, 64594	487 bp downstream
Gm64601	predicted gene, 64601	996 bp upstream
Rr367556	regulatory region 367556	151 bp downstream
Rr585239	regulatory region 585239	1555 bp distal
Rr585240	regulatory region 585240	650 bp distal
Rr585241	regulatory region 585241	103 bp distal
Tssr31681	transcription start site region 31681	792 bp downstream