rs6391253 SNP Detail

Summary

• ID
  rs6391253
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143448189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATCA ACAAAGTGGA GGAAATGTTA
  K
  TAATTAATCA CATGGTTTAT GGAAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8797427	WI_WGS_3_144257378	WI	MOUSE	f	SNP		G	T
ss136026105	ENSMUSSNP6601990	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			T
ss321005974	CHEV_3_143405392	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6391253					SNP	T	G	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143448189 () rs orientation: forward

Symbol	Name	Function Class
Gm33867	predicted gene, 33867	850 bp upstream
Gm42705	predicted gene 42705	949 bp upstream
Rr586558	regulatory region 586558	459 bp proximal
Rr586559	regulatory region 586559	548 bp proximal
Rr586560	regulatory region 586560	960 bp proximal