rs6390901 SNP Detail

Summary

• ID
  rs6390901
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113699918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGTGCAG ATGCCTGTGG
  AAGCTAGAGA TGATAGAACA AGATTTACCT ATGGGCTGTA GAGGTGTCAA CATTATTCAA
  GTTCTCCAAG ACCTTGCACT GAATCCTTGT AATCGCCACA GGTGACTGCC TAGTCTGGAG
  TCACGAGTAG TTACTGCCTT CTGAGTGCAT TTGTAATTAC TATCTGGGTA TGCCATTTGC
  M
  CAGGGAAGGC TTTCTTTACT AATTTTCAAA GTTAGGATTG ACTCAACATG AGCTCATAAA
  TTAATGTACA TGGCAGCTTT TCACCTTATC CATTCTGTCC AGTGCTTTTT TAATTGACTC
  TGGATGCTTT TGAAATGATG CCAGTTTTGA ATAACTTTCT GTTCCACTGA GATCCTTTAA
  GTACATTGTG TGCATTTCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8797073	WI_WGS_6_114635415	WI	MOUSE	f	SNP							C		A
ss51839607	NES14764953	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6390901					SNP	C	C	C	C	C	C	C	C	A	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51839607	NES14764953	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113699918 () rs orientation: forward

Symbol	Name	Function Class
Rr636588	regulatory region 636588	1512 bp distal