rs6390697 SNP Detail

Summary

• ID
  rs6390697
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143448085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCC CTGAGTTCAG AAGGTCTAGA
  Y
  GTGATTCCTA GACTGCCCAT TTATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8796868	WI_WGS_3_144257274	WI	MOUSE	f	SNP		C	T
ss136026102	ENSMUSSNP837630	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			T
ss321005973	CHEV_3_143405288	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6390697					SNP	T	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143448085 () rs orientation: forward

Symbol	Name	Function Class
Gm33867	predicted gene, 33867	954 bp upstream
Gm42705	predicted gene 42705	1053 bp upstream
Rr586558	regulatory region 586558	563 bp proximal
Rr586559	regulatory region 586559	652 bp proximal
Rr586560	regulatory region 586560	1064 bp proximal