rs6390694 SNP Detail

Summary

• ID
  rs6390694
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:56943063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACAGTGA GGTGCTCAGT
  GTGTTAAAGT GCATGTGTGC ATGCAGGCAC ACCTACTCAT GTGAGACAAA GGCTGACTTT
  GAGATGTCTT CCTTACTCAT GTCTCCATCT TTTTTCTTCC TTTCTTTCTT TTTCCCCCTT
  CTCCTTTTCT GAGGCAAGTC TCTCAACCTG GAGCTCACCA TTTTGCCTGG ACTGGCTGGA
  R
  AGCAAGCCAC CAGGATCCAC CAGTCTCCAT CACCACTCCA CGGCTTCTAT TGGATTCTAA
  GGATTCAAAC TCAGACTCTC AAGCACTTTA CCGGCTGAGC CATCTCCCGG GCCCCACTTC
  CTAAGTCTCT CTCAGACAGA AGAAACAAGC CGTCTCCAAT CACTGCTAGA GCAGCAACTA
  CTCCAAGTAC TTCATTCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8796865	WI_WGS_4_55840989	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6390694					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:56943063 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr592624	regulatory region 592624			within coordinates
Rr592625	regulatory region 592625			1047 bp proximal
Tmem245	transmembrane protein 245			Intron
				Noncoding-Transcript-Variant