rs6390670 SNP Detail

Summary

• ID
  rs6390670
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:56943044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATACTTCT CAGTGAAATG
  GCACAGTGAG GTGCTCAGTG TGTTAAAGTG CATGTGTGCA TGCAGGCACA CCTACTCATG
  TGAGACAAAG GCTGACTTTG AGATGTCTTC CTTACTCATG TCTCCATCTT TTTTCTTCCT
  TTCTTTCTTT TTCCCCCTTC TCCTTTTCTG AGGCAAGTCT CTCAACCTGG AGCTCACCAT
  W
  TTGCCTGGAC TGGCTGGAAA GCAAGCCACC AGGATCCACC AGTCTCCATC ACCACTCCAC
  GGCTTCTATT GGATTCTAAG GATTCAAACT CAGACTCTCA AGCACTTTAC CGGCTGAGCC
  ATCTCCCGGG CCCCACTTCC TAAGTCTCTC TCAGACAGAA GAAACAAGCC GTCTCCAATC
  ACTGCTAGAG CAGCAACTAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8796841	WI_WGS_4_55840970	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6390670					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:56943044 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr592624	regulatory region 592624			within coordinates
Rr592625	regulatory region 592625			1066 bp proximal
Tmem245	transmembrane protein 245			Intron
				Noncoding-Transcript-Variant