rs6390614 SNP Detail

Summary

• ID
  rs6390614
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143448044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGTCCAAT CATTTCATAG
  CGGGCATGCA GAGAGTCAGA ACAGCCATGG ACAGTGGAGC AACTGAGAGT CCATGAGCAG
  CTTCCCAGTA AAATGAGAAG AAATCAGTTC TTCCTCCTGA GTATAGAATT TTCCCTGCCT
  CTACTCTGCT TTTCTTCCAA TGAGCTGCTA GCACTATCCG ATGTGTCCTG GGAGAGCTAC
  Y
  GTAACACAAT CTGAACCCCC CTGAGTTCAG AAGGTCTAGA CGTGATTCCT AGACTGCCCA
  TTTATTGGTT GTATGGTATT AGAAAAAAGT TGCTTGTTTT ATCTGAGCCT CAAATTTCCT
  ATCAACAAAG TGGAGGAAAT GTTAGTAATT AATCACATGG TTTATGGAAA GTTAAGGCAC
  TTTGCTTCAT GCTAGACCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8796785	WI_WGS_3_144257233	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6390614					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143448044 () rs orientation: forward

Symbol	Name	Function Class
Gm33867	predicted gene, 33867	995 bp upstream
Gm42705	predicted gene 42705	1094 bp upstream
Rr586558	regulatory region 586558	604 bp proximal
Rr586559	regulatory region 586559	693 bp proximal
Rr586560	regulatory region 586560	1105 bp proximal