rs6390591 SNP Detail

Summary

• ID
  rs6390591
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79384403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACTCAGG ACCTTCGGAA
  GAGCAGTCAG TGCTCTTAAC CACAGAGCCA TCTCTCCAGC CCTGAGACTG GAATTATTTA
  TACCCGCAAA TCAGACTGTG AAAGCAAGTG GTGCACGGGC TTGACCCCAC TTGCCCCACA
  AGTTCTCAGT GCACAGGACA TGCATACCTC TCAAATTGCC GCTTCTTTTC CTGACAGTGT
  Y
  CTCAGCTCAG AAAACCACTG TTCCTTAAAA TGGTCAACTC ACCAATGTTT TAAAAATACC
  CTTATTTCTC AAGTATTTGT AAATGGAAGT TGAGTGCCTT TTAAAGTAAA AACAGAACAA
  CACTGTTACA GACCAGAGTG TGAGCTAGAG AGGCAGTCTA CATGAAACTC CGCTTCAAAA
  TCAAAACTCA GGACCACCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8796762	WI_WGS_3_80148828	WI	MOUSE	f	SNP	C						T
ss47030814	NES10777700	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T		T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6390591					SNP	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47030814	NES10777700	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79384403 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	Intron
Rr578524	regulatory region 578524	1655 bp distal
Rr578525	regulatory region 578525	775 bp distal
Rr578526	regulatory region 578526	1379 bp proximal