rs6390575 SNP Detail

Summary

• ID
  rs6390575
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143448024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAA TGAGCTGCTA GCACTATCCG
  M
  TGTGTCCTGG GAGAGCTACT GTAAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8796746	WI_WGS_3_144257213	WI	MOUSE	f	SNP							A		C
ss51661409	NES14645710	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	C	A	C		C		C	C	A		C	C	C	C		A
ss136026099	ENSMUSSNP4778870	ENSEMBL	ENSEMBL_Sanger	f	SNP		C								C
ss321005972	CHEV_3_143405227	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6390575					SNP	A	C	C	C	A	C	A	C	C	C	C	A	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51661409	NES14645710	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143448024 () rs orientation: forward

Symbol	Name	Function Class
Gm33867	predicted gene, 33867	1015 bp upstream
Gm42705	predicted gene 42705	1114 bp upstream
Rr586558	regulatory region 586558	624 bp proximal
Rr586559	regulatory region 586559	713 bp proximal
Rr586560	regulatory region 586560	1125 bp proximal