rs6389517 SNP Detail

Summary

• ID
  rs6389517
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143447827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAAAACT TAGTTAAGCA
  TCAGATTTTA AACTTAAGCT CCCATGTGCC TTAATTTAAA CCAAAGAGTT ACTTTTTCCA
  TCCCCATATA GAAACTGCCA GCTCTCATGC TGGAGTGCAC AGACCATCAC TGGTAAGCAG
  TCTGTTTTCA AAGCTTCTCT CACAATTTTG AGTCAGACTG TCGGACAGGT GGGAGAGAAC
  K
  TCAATGTCCT TCAAATAACG TCCAATCATT TCATAGCGGG CATGCAGAGA GTCAGAACAG
  CCATGGACAG TGGAGCAACT GAGAGTCCAT GAGCAGCTTC CCAGTAAAAT GAGAAGAAAT
  CAGTTCTTCC TCCTGAGTAT AGAATTTTCC CTGCCTCTAC TCTGCTTTTC TTCCAATGAG
  CTGCTAGCAC TATCCGATGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8795685	WI_WGS_3_144257016	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6389517					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143447827 () rs orientation: forward

Symbol	Name	Function Class
Gm33867	predicted gene, 33867	1212 bp upstream
Gm42705	predicted gene 42705	1311 bp upstream
Rr586558	regulatory region 586558	821 bp proximal
Rr586559	regulatory region 586559	910 bp proximal
Rr586560	regulatory region 586560	1322 bp proximal