rs6389263 SNP Detail

Summary

• ID
  rs6389263
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100139108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGA CTGTGTTAGT CAGCCGTCTG
  Y
  CACAATGACA AGATGCCTGA GGTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8795431	WI_WGS_4_98046331	WI	MOUSE	f	SNP		T	C
ss45625996	mCV22700290	ABI	CRAMUS_MOUSE	f	SNP	C	T		T
ss321226572	CHEV_4_99954516	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6389263					SNP	C	T	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100139108 () rs orientation: forward

Symbol	Name	Function Class
Ror1	receptor tyrosine kinase-like orphan receptor 1	Intron
Rr595970	regulatory region 595970	1283 bp proximal