rs6389074 SNP Detail

Summary

• ID
  rs6389074
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53769847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTAAGCC TGGATTTCTC
  TTCTCAGAAG CGCAGATGAA TTTTTTGTGC TAGCATTTTT CCTTCCAAAT GTTAATTAAT
  AACCTAATCC TCAGTAGAAC AAAGCAGGAA GACTGTAGAA AGGGGCTTTC CCAACAGTAG
  CTATGTGCTT TCTTGTAAAG GCATGGGAGA TGTTTACGGG CATTCCATAA AAGTGAGAGG
  S
  GTCCCCTCTG ATTTCTTTTG AATGGTGGGA AAAGGAGCTG TGGAAATTTT GAAATAAGAC
  AAAAATACTT TCTGTGGATA GGAAAATGAG AAAATTTAGG GGAGCACAGT CGAGTGCCAG
  TTATGAGGGT TTCACATAAA ACTCATCAGC ACTATTGTAA TTTCTTCAGG AACAGAGTTA
  AGTGCAGAGA ACATAAATTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8795242	WI_WGS_3_54325949	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6389074					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53769847 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13168	CpG island 13168	938 bp proximal
Rr367439	regulatory region 367439	1511 bp upstream
Rr576756	regulatory region 576756	726 bp proximal
Rr576757	regulatory region 576757	1330 bp proximal
Tssr33277	transcription start site region 33277	1338 bp downstream
Ufm1	ubiquitin-fold modifier 1	Intron