rs6388562 SNP Detail

Summary

• ID
  rs6388562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53769741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTAAAGG CAGTGTTAAT
  TAAGTACAAA AACCAGACAC CTCTCTAGCA GAGAAAACGT TTCTATTTGT CAACACATAA
  AACATCGATG TCATATAACA TTTGTAGGGC TAAGCCTGGA TTTCTCTTCT CAGAAGCGCA
  GATGAATTTT TTGTGCTAGC ATTTTTCCTT CCAAATGTTA ATTAATAACC TAATCCTCAG
  Y
  AGAACAAAGC AGGAAGACTG TAGAAAGGGG CTTTCCCAAC AGTAGCTATG TGCTTTCTTG
  TAAAGGCATG GGAGATGTTT ACGGGCATTC CATAAAAGTG AGAGGCGTCC CCTCTGATTT
  CTTTTGAATG GTGGGAAAAG GAGCTGTGGA AATTTTGAAA TAAGACAAAA ATACTTTCTG
  TGGATAGGAA AATGAGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8794728	WI_WGS_3_54325843	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6388562					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53769741 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13168	CpG island 13168	1044 bp proximal
Rr367439	regulatory region 367439	1617 bp upstream
Rr576756	regulatory region 576756	832 bp proximal
Rr576757	regulatory region 576757	1436 bp proximal
Tssr33277	transcription start site region 33277	1444 bp downstream
Ufm1	ubiquitin-fold modifier 1	Intron