rs6388543 SNP Detail

Summary

• ID
  rs6388543
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:56942663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTGTTGC TTTGTCTGGA
  TACAGGACCT CACTGTGAAC TGTCCTCAAG GTCACAATCC TCTGTCCTGG TCTCCCAAGC
  ACTAGGTTTA CAGAGCCACC ATGACCAAGA ACAGGGTTTT CCTCCCTAGC CCAGACATTC
  AGCCTCATGA GCACACCTGC TTGTGTGGGA ATTTAAATCT CTGAACCACA GCTGACCTGA
  R
  GGCTTCCTAA CATTTATCCT CTCTTAAACA TGCTGTGCTC TCTCCAAAAT ACATAATCCA
  ACCATCTTTT AGCACCCGTG TGCTAGACAT TACATAAGAT GGCATAAAAC TTGGCAGCAT
  TCAGTTAGCT CTCCAAGTAA GGCACTCATA TTTTCCTTTC AGGAGACACA ATCACACATG
  ACATACTTCT CAGTGAAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8794709	WI_WGS_4_55840589	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6388543					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:56942663 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr592623	regulatory region 592623			1746 bp distal
Rr592624	regulatory region 592624			373 bp proximal
Rr592625	regulatory region 592625			1447 bp proximal
Tmem245	transmembrane protein 245			Intron
				Noncoding-Transcript-Variant