rs6388450 SNP Detail

Summary

• ID
  rs6388450
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:56942592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTTGTTT GGAAGGGAAG
  GGGATTAAAC TCAGCAGAGA CCCTCTCACC GAGCTGGCTT TCCAACCCTT AAGAGTGTTG
  CTTTGTCTGG ATACAGGACC TCACTGTGAA CTGTCCTCAA GGTCACAATC CTCTGTCCTG
  GTCTCCCAAG CACTAGGTTT ACAGAGCCAC CATGACCAAG AACAGGGTTT TCCTCCCTAG
  Y
  CCAGACATTC AGCCTCATGA GCACACCTGC TTGTGTGGGA ATTTAAATCT CTGAACCACA
  GCTGACCTGA AGGCTTCCTA ACATTTATCC TCTCTTAAAC ATGCTGTGCT CTCTCCAAAA
  TACATAATCC AACCATCTTT TAGCACCCGT GTGCTAGACA TTACATAAGA TGGCATAAAA
  CTTGGCAGCA TTCAGTTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8794616	WI_WGS_4_55840518	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6388450					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:56942592 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr592623	regulatory region 592623			1675 bp distal
Rr592624	regulatory region 592624			444 bp proximal
Rr592625	regulatory region 592625			1518 bp proximal
Tmem245	transmembrane protein 245			Intron
				Noncoding-Transcript-Variant