rs6387960 SNP Detail

Summary

• ID
  rs6387960
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123026241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGTCTGACC CATCTATTTG CTCATTACCT TTAAAATGTA
  AGTCAGTTTT TAATTGTAAG GTTAGCTTGT AAAAGAAAAC TTTCTCCAAG TCTTTATAGA
  R
  AGATTTCTCC AAGGGGTTTG CCAAGAGACT GCCAGGGACC TGGCCATGTA AGCACATGTC
  CCCAAAGAGA GTTTGATAAT GTGAAGACAC CGACATCGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
ss8794124	WI_WGS_3_123626336	WI	MOUSE	f	SNP	A	G
ss320918209	CHEV_3_122935510	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
rs6387960					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123026241 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr584473	regulatory region 584473			1456 bp proximal
Synpo2	synaptopodin 2			Intron
				Noncoding-Transcript-Variant