rs6387576 SNP Detail

Summary

• ID
  rs6387576
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152372165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATCACTTT GTAATGCAGG
  CAGACTGATC GCCAGCTCTC CCCTCCTGCC TCAGCAATCC CCCGTGGCCA GCTGTCACAT
  GCCCCTCCTA GTGTCACACT GTGGATCGTC ACTACCTTGC AGTGAGTTCT GGAGGCTTCT
  CATGTACTTA ACACTCAGCT CCAGGATATC GGCCTTCTCC AGCTTTCGTT TCCGTATCTG
  Y
  GGAGCCATAG AAAGATGCTT TTACTGGGCA TCTCGGGAGG GAATGGACTG AGGACTCCCC
  TCCTCTCCTG CCTTACCTGA TGTGAGTAGT GTCTCTCCAG AAGAGACCTC AGCTGCTCCA
  GTGACACGTT GATGCGTGCA CGGCGCTTCT TCTCCATCAG AGGCTTGGAG ATCTGTGGGC
  CAGACAGTAG TTTTTAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8793739	WI_WGS_4_147696310	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6387576					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152372165 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15404	CpG island 15404			370 bp distal
Hes3	hes family bHLH transcription factor 3			Intron
				Splice-Site
Rr398899	regulatory region 398899			1400 bp upstream
Rr605827	regulatory region 605827			1992 bp distal
Rr605828	regulatory region 605828			887 bp proximal
Rr605829	regulatory region 605829			1895 bp proximal
Tssr44825	transcription start site region 44825			362 bp downstream