rs6387482 SNP Detail

Summary

• ID
  rs6387482
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123026204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGT CAGTTTTTAA TTGTAAGGTT
  W
  GCTTGTAAAA GAAAACTTTC TCCAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
ss8793644	WI_WGS_3_123626299	WI	MOUSE	f	SNP	T	A
ss320918206	CHEV_3_122935473	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
rs6387482					SNP	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123026204 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr584473	regulatory region 584473			1493 bp proximal
Synpo2	synaptopodin 2			Intron
				Noncoding-Transcript-Variant