rs6387446 SNP Detail

Summary

• ID
  rs6387446
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123026165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCGCTGAGCC ATCTCACCAG CCCAAGATTA TTTTTTTTAA
  AACAAACTTC TGTGGTGGAT CACCTTAATT TATATTTAGT CTGACCCATC TATTTGCTCA
  Y
  TACCTTTAAA ATGTAAGTCA GTTTTTAATT GTAAGGTTAG CTTGTAAAAG AAAACTTTCT
  CCAAGTCTTT ATAGAGAGAT TTCTCCAAGG GGTTTGCCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J
ss8793608	WI_WGS_3_123626260	WI	MOUSE	f	SNP			C	T
ss51024684	NES13910136	PERLEGEN	MM_PANEL2	f	SNP	C	C	C		C	C	T		C
ss320918205	CHEV_3_122935434	CHEVERUD	SCREENING_POP	f	SNP								T		C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J
rs6387446					SNP	C	C	C	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51024684	NES13910136	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123026165 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr584473	regulatory region 584473			1532 bp proximal
Synpo2	synaptopodin 2			Intron
				Noncoding-Transcript-Variant