rs6385434 SNP Detail

Summary

• ID
  rs6385434
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118912547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAT CTCCTAAAAA GACACCACAT
  Y
  TCAAAATATC TGCCCAACAT CCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8791590	WI_WGS_6_119728027	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6385434					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118912547 () rs orientation: forward

Symbol	Name	Function Class
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit	Intron
Rr637552	regulatory region 637552	624 bp distal
Rr637553	regulatory region 637553	28 bp proximal