rs6385345 SNP Detail

Summary

• ID
  rs6385345
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73861267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTGCTTC TGCTTTCAAG
  TCTCCGAAGA GCAAGTGAGG CTCGGAGTTA CTGGATGAAA ACCTTCCACT CAAAGTCAGT
  GAGAGCTTCC GATGGCTGAA GCTGGGTATG AAGGGAAACA TGCAGCTTCG CTCAAGAGTG
  AATTCTTTCC CTCTAGACAC GTCCTAGCAA TGTTTGGAAT CAAGGACGAA GGCTGCTAGA
  R
  GCTATACCAT TTCAACACAT CAGGTAATTC CCTAGGCGGC CATCCCAAAC ATGTGACATC
  ATTTATTGTA GCTGATTGGC CAGAAGATGC CCAACCTGAC TTCATTAACT TTAATGATCT
  GGAGATCACA GAGAAACCAC AGGACACTTA GTAAGTCTGT TGCTTCTGCG TCTTACCCAA
  GGTAGAACAT TTCCAAACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8791501	WI_WGS_2_74886173	WI	MOUSE	f	SNP						A		G
ss38115294	NES09278123	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A		G		A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6385345					SNP	A	A	A	A	A	A	G	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38115294	NES09278123	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73861267 () rs orientation: forward

Symbol	Name	Function Class
Rr373361	regulatory region 373361	within coordinates
Rr559274	regulatory region 559274	1600 bp proximal