rs6384911 SNP Detail

Summary

• ID
  rs6384911
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30073643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGCTGGAG CAGAACTAAG
  GCAGTTAATG TGTTTGGAAC TCACCTCAAC TCTGTACGAA TTGCTTTTTT CTTTTTCATT
  ATTTTATTCA TTTTAATTAA TTCAGCCTTT TCAAGACAGT GTTTAGCACA GTGTGCAATA
  ACTCCAGGGT CGAAGTCCTC CCCAGGGTTT TAGAAACTTA CTCAAAAGTG CTTTCAGCCT
  Y
  CTAATCTGTG GAGAGAGTGA GTTGGAAGGC ATGCACGCCT CGCCTCCACT CCTCTTGTGT
  ACCTTTGGGT AAGTCACTTA ACCTTTGAGT TGATTTCCAT GCAAGTTTCA TAATATCAGC
  ATAATGAGAG TGTTGGGAAA ATCCATTGGG TAATGTAAGC GTGAGGTGCT CTGACTCCGT
  GGGAACAGGT CAAAATAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8791067	WI_WGS_3_29832528	WI	MOUSE	f	SNP							T		C
ss46886479	NES10819094	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6384911					SNP	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886479	NES10819094	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30073643 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Mecomos	MDS1 and EVI1 complex locus, opposite strand			446 bp upstream
Rr574707	regulatory region 574707			862 bp distal
Rr574708	regulatory region 574708			within coordinates
Rr574709	regulatory region 574709			556 bp proximal