rs6384838 SNP Detail

Summary

• ID
  rs6384838
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83427415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCACCAT TATCATTGCC
  CCAGCCCATG TTCTGCTGCT GTAATGAAGT GGATCACAAA GCAGGACTTT ATTTGGATGC
  TTTACTTGGG TGTTATTTGA GGTAACTCCA ATATCAAGGG TCCACAGTAT GGCAGGAAAG
  GGAGGGCATG CTAACATTGG TCTAACTTTT CATTCTAGGA CTCAAGAACC TGGGAATTCT
  Y
  CTGGGTGCCC TCTGGACTCA TATCCACACC TATTAGAAAT TCTGGTGATG GCCCTACTAT
  ATGCCACAAC ACTACAAGCC AGCATCCGAG GACAGAGATA AAAATCAGGG GACATTTTAT
  AAGAAGGCTA CAACCTAGGC AATTAACCCA TTCCTCTGTA AACCTTTACT GCATCCTTGG
  TGAAGATAAC TCTACATCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8790994	WI_WGS_3_84218805	WI	MOUSE	f	SNP							C		T
ss51561383	NES14681206	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6384838					SNP	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51561383	NES14681206	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83427415 () rs orientation: forward

Symbol	Name	Function Class
Rr578867	regulatory region 578867	1545 bp distal