rs6384227 SNP Detail

Summary

• ID
  rs6384227
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83427311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGCTCTG TAGTAGTTTA
  ATTGGTTAGT TGGTTGGTTG GCTGGTTTTA AGGGCTAATT CAGAGCCCAA TGCACCCAAG
  GCGAGCAAGC ATCCTACTTG GCCCTTCTCA CCATTATCAT TGCCCCAGCC CATGTTCTGC
  TGCTGTAATG AAGTGGATCA CAAAGCAGGA CTTTATTTGG ATGCTTTACT TGGGTGTTAT
  Y
  TGAGGTAACT CCAATATCAA GGGTCCACAG TATGGCAGGA AAGGGAGGGC ATGCTAACAT
  TGGTCTAACT TTTCATTCTA GGACTCAAGA ACCTGGGAAT TCTCCTGGGT GCCCTCTGGA
  CTCATATCCA CACCTATTAG AAATTCTGGT GATGGCCCTA CTATATGCCA CAACACTACA
  AGCCAGCATC CGAGGACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8790383	WI_WGS_3_84218701	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6384227					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83427311 () rs orientation: forward

Symbol	Name	Function Class
Rr578867	regulatory region 578867	1441 bp distal