rs6384008 SNP Detail

Summary

• ID
  rs6384008
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83996097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTTAGCA ACTTTCTCAA
  CCTTGGAGGG TGAAGAGTGC AAAGATTGTT GCAGTGGAGA ACTGCAGGAA ATCGAATGGG
  CAGCGACTGG GAACGTAGTG TGATTTGAGT TAGACCTCAA CAACTCTAGG TGTCGCCAGG
  AGATTTCCGT GGCAGCTCAC TAGCAGTTGT GCCTGGGTCA CTGGGCACAC AGTGCGCACT
  Y
  ATTCGGCGTT TACTGCGAGA CTCTTTGGAC CCGCGCTACC CCAGGCAACA ACCCTGCCCT
  GTTCTTGCCA GCCACTCATC CAGTACCTCG CAGCAGCGTT TCCTTCTCTG GAGACCCTCA
  GAACAAGGCA CCAGTGCCTG GTCCAGAGTA ATTCCTTGCT CCTCCTTGGC CACCGCCCTG
  AGGGCGGACC CAGGCCGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8790164	WI_WGS_6_84911888	WI	MOUSE	f	SNP							T		C
ss60905564	NES15954303	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6384008					SNP	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60905564	NES15954303	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83996097 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17623	CpG island 17623			within coordinates
Dysf	dysferlin			Intron
				Noncoding-Transcript-Variant
Rr632975	regulatory region 632975			1393 bp distal
Rr632976	regulatory region 632976			1506 bp distal
Rr632977	regulatory region 632977			within coordinates
Rr632978	regulatory region 632978			61 bp distal
Rr632979	regulatory region 632979			854 bp proximal
Tssr1912	transcription start site region 1912			279 bp upstream
Tssr57398	transcription start site region 57398			231 bp upstream
Tssr57399	transcription start site region 57399			249 bp upstream