rs6383706 SNP Detail

Summary

• ID
  rs6383706
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30073438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACACATTC AAAAGGAAAA
  AAAGAGACAA GCCAATATAT ACTCACAAGT CTAAGAAACA AAGAGTCACA AAACGCACAA
  CGTACACCTG TGCCAATAGG ATAAAGGGCA TCTTTTATAC CACTGAGGGC ATTTTATAAC
  TATCTTCAGT TTCTAGAGAA AACTAACCAT GGTCATTCTC AAAATGCCAA ATCTTCTCTT
  M
  TGTCTATGCT GGAGCAGAAC TAAGGCAGTT AATGTGTTTG GAACTCACCT CAACTCTGTA
  CGAATTGCTT TTTTCTTTTT CATTATTTTA TTCATTTTAA TTAATTCAGC CTTTTCAAGA
  CAGTGTTTAG CACAGTGTGC AATAACTCCA GGGTCGAAGT CCTCCCCAGG GTTTTAGAAA
  CTTACTCAAA AGTGCTTTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8789862	WI_WGS_3_29832323	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6383706					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30073438 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Mecomos	MDS1 and EVI1 complex locus, opposite strand			651 bp upstream
Rr574707	regulatory region 574707			657 bp distal
Rr574708	regulatory region 574708			114 bp proximal
Rr574709	regulatory region 574709			761 bp proximal