rs6383685 SNP Detail

Summary

• ID
  rs6383685
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30073433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GGAGCACAGA
  ATAGCATTCT TTTTCTCTTA TCTGACTGTC TGATGCTTTC GATGTGAACA CATTCAAAAG
  GAAAAAAAGA GACAAGCCAA TATATANTCA CAAGTCTAAG AAACAAAGAG TCACAAAACG
  CACAACNTAC ACCTGTGCCA ATAGGATAAA NGGCATCTTT TATACCACTG AGGGCATTTT
  ATAACTATCT TCAGTTTCTA GAGAAAACTA ACCATGGTCA TTCTCAAAAT GCCAAATCTT
  Y
  TCTTNTGTCT ATGCTGGAGC AGAACTAAGG CAGTTAATGT GTTTGGAACT CACCTCAACT
  CTGTACGAAT TGCTTTTTTC TTTTTCATTA TTTTATTCAT TTTAATTAAT TCAGCCTTTT
  CAAGACAGTG TTTAGCACAG TGTGCAATAA CTCCAGGGTC GAAGTCCTCC CCAGGGTTTT
  AGAAACTTAC TCAAAAGTGC TTTCAGCCTN CTAATCTGTG GAGAGAGTGA GTTGGAAGGC
  ATGCACGCCT                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8789841	WI_WGS_3_29832318	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6383685					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30073433 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Mecomos	MDS1 and EVI1 complex locus, opposite strand			656 bp upstream
Rr574707	regulatory region 574707			652 bp distal
Rr574708	regulatory region 574708			119 bp proximal
Rr574709	regulatory region 574709			766 bp proximal