rs6383372 SNP Detail

Summary

• ID
  rs6383372
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108289180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAACTCCC TGGGATAAGA
  AATGACCTGA GAGCTCCTTC AAAGCCTGAG TTCAAAACTT GGGGCTTGGG GTTCCAACCG
  ATGTGCTTTG ATCTGGAAAG CAGCAGCACC AGGCCCCCCC CCCAGAGCCT GTCTGCCTGG
  TCTCAGGGAG CCCAGAAAGG TAGGACAGAG TGGGGAGTCC TGGACCTAGA CTGTAAGGAC
  R
  GAGGTCTGAG ATTTCAGAAT AGAAGGACAT GCCGAATAAT GAGTAGGAGA TAGCCAGGGA
  GATAAAGGGA GCTTGATCAA GTTCAAATGG ATGCTGCTGT GGGTTTGAGA GTGTTATTTT
  TCAAGATGGC CCTTTAGATC TTTCTACCTT TATTTTGCTT GTATTTATTT TGAGGGCCTT
  TGGGTTTGTT TTGTTTCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8789528	WI_WGS_4_106181749	WI	MOUSE	f	SNP					A		G
ss38280902	NES09495625	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A		A		A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6383372					SNP	A	A	A	A	A	A	G	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38280902	NES09495625	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108289180 () rs orientation: forward

Symbol	Name	Function Class
Gm40223	predicted gene, 40223	within coordinates
Rr597185	regulatory region 597185	596 bp distal
Rr597186	regulatory region 597186	28 bp distal
Rr597187	regulatory region 597187	1407 bp proximal
Tssr38291	transcription start site region 38291	601 bp downstream