rs6383242 SNP Detail

Summary

• ID
  rs6383242
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59850084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTCACTT TTAACAAAAC
  GAGAGCATGG AGTAGATGTG ACTGGATGTG TTCATGCTGT GGGCTAAAGC CATCTCCTGC
  ATGTCTCTCG CTGCTGTGTG AACTCTCTCC TGGGTGTGTT TTCTTGGGTT AAGTTGATGA
  GGTAATGCAG GCTTAAGGTT TCTTTTTTCT TTTTAGTTTG TTTACTCATG GCTGATGTGG
  Y
  TATAACACAT GTCTGCTATT GGCCTTGCGT TAGAACAGGT GAATTGGACT GGCTGTTTCT
  GCTTGATGTT GCTAGAACTA TCGTCTTGAG TTTTTTACTT GTAATCACTC GAACAGGACA
  AGGGTGAGGG GAAGGAAGGC TGGGTCCTGG CGTTCCTGTA GAGGAAAGTT GGCTTGGCTC
  ATCCTAGGGT CTGGGTTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8789398	WI_WGS_4_58770569	WI	MOUSE	f	SNP							T		C
ss38009458	NES09421485	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6383242					SNP	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38009458	NES09421485	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59850084 () rs orientation: forward

Symbol	Name	Function Class
Rr376573	regulatory region 376573	within coordinates
Rr593160	regulatory region 593160	within coordinates
Rr593161	regulatory region 593161	332 bp proximal
Rr593162	regulatory region 593162	1156 bp proximal
Snx30	sorting nexin family member 30	Intron