rs6383074 SNP Detail

Summary

• ID
  rs6383074
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30073343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAAATAAG CAGCTTAATA
  AAACACAGCA AAGTGGGAGG GGAGCACAGA ATAGCATTCT TTTTCTCTTA TCTGACTGTC
  TGATGCTTTC GATGTGAACA CATTCAAAAG GAAAAAAAGA GACAAGCCAA TATATACTCA
  CAAGTCTAAG AAACAAAGAG TCACAAAACG CACAACGTAC ACCTGTGCCA ATAGGATAAA
  R
  GGCATCTTTT ATACCACTGA GGGCATTTTA TAACTATCTT CAGTTTCTAG AGAAAACTAA
  CCATGGTCAT TCTCAAAATG CCAAATCTTC TCTTATGTCT ATGCTGGAGC AGAACTAAGG
  CAGTTAATGT GTTTGGAACT CACCTCAACT CTGTACGAAT TGCTTTTTTC TTTTTCATTA
  TTTTATTCAT TTTAATTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8789230	WI_WGS_3_29832228	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6383074					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30073343 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Mecomos	MDS1 and EVI1 complex locus, opposite strand			746 bp upstream
Rr574707	regulatory region 574707			562 bp distal
Rr574708	regulatory region 574708			209 bp proximal
Rr574709	regulatory region 574709			856 bp proximal