rs6383046 SNP Detail

Summary

• ID
  rs6383046
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30073319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CCTGAGCCAT
  TATGCTGAGT GGCTGAAGTA TCACAACAAA AAGGCTTCTT TTAAAGTTTC AGTGAACACC
  GTATGATAAA TAAGCAGCTT AATAAAACAC AGCAAAGTGG GAGGGGAGCA CAGAATAGCA
  TTCTTTTTCT CTTATCTGAC TGTCTGATGC TTTCGATGTG AACACATTCA AAAGGAAAAA
  AAGAGACAAG CCAATATATA NTCACAAGTC TAAGAAACAA AGAGTCACAA AACGCACAAC
  R
  TACACCTGTG CCAATAGGAT AAANGGCATC TTTTATACCA CTGAGGGCAT TTTATAACTA
  TCTTCAGTTT CTAGAGAAAA CTAACCATGG TCATTCTCAA AATGCCAAAT CTTNTCTTNT
  GTCTATGCTG GAGCAGAACT AAGGCAGTTA ATGTGTTTGG AACTCACCTC AACTCTGTAC
  GAATTGCTTT TTTCTTTTTC ATTATTTTAT TCATTTTAAT TAATTCAGCC TTTTCAAGAC
  AGTGTTTAGC                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8789202	WI_WGS_3_29832204	WI	MOUSE	f	SNP						G		A
ss46886476	NES10819091	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G		G		G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6383046					SNP	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886476	NES10819091	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30073319 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Mecomos	MDS1 and EVI1 complex locus, opposite strand			770 bp upstream
Rr574707	regulatory region 574707			538 bp distal
Rr574708	regulatory region 574708			233 bp proximal
Rr574709	regulatory region 574709			880 bp proximal