rs6382748 SNP Detail

Summary

• ID
  rs6382748
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108289059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ACCCAAACTC
  TGCTCAGTAC TCTGGCTGTG GACAAGTTGA ATTTGGGGTG CCCAAGAGAT GCAAGTCAGA
  TTCAGCAATG TTCACATTGC TGGTCAAATG TTCACACTCC TTGTCAAAGC TNGTGCAGTG
  GGTGCTCCAG CAGCACACAG ATGCTCATGG GNTAGGACAC CTGAAACTCC CTGGGATAAG
  AAATGACCTG AGAGCTCCTT CAAAGCCTGA GTTCAAAACT TGGGGCTTGG GGTTCCAACC
  R
  ATGTGCTTTG ATCTGGAAAG CAGCAGCACC AAGCCCCCCC CCCAGAGCCT GTCTGCCTGG
  TCTCAGGGAG CCCATAAAGG TATGACAGAG TGGGGAGTCC TGCACCTAGA CTGTAAGGAC
  NGAGGTCTGA GATTTCAGAA TAGAAGGACA TGCCGAATAA TGAGTAGGAG ATAGCCAGGG
  AGATAAAGGG AGCTTGATCA AGTTCAAATG GATGCTGCTG TGGGTTTGAG AGTGTTATTT
  TTCAAGATGG                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8788904	WI_WGS_4_106181628	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6382748					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108289059 () rs orientation: forward

Symbol	Name	Function Class
Gm40223	predicted gene, 40223	within coordinates
Rr597185	regulatory region 597185	475 bp distal
Rr597186	regulatory region 597186	within coordinates
Rr597187	regulatory region 597187	1528 bp proximal
Tssr38291	transcription start site region 38291	480 bp downstream