rs6382264 SNP Detail

Summary

• ID
  rs6382264
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108288970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GAGGAATCCA
  AGGTTCAAGA GCTAGAGGAA CCTGTTCGAA GTCCATGTTA ACAGGTACAA AGATAAACTT
  AGGTTTTTGT TGTTGTGACA CCCAAACTCT GCTCAGTACT CTGGCTGTGG ACAAGTTGAA
  TTTGGGGTGC CCAAGAGATG CAAGTCAGAT TCAGCAATGT TCACATTGCT GGTCAAATGT
  TCACACTCCT TGTCAAAGCT NGTGCAGTGG GTGCTCCAGC AGCACACAGA TGCTCATGGG
  Y
  TAGGACACCT GAAACTCCCT GGGATAAGAA ATGACCTGAG AGCTCCTTCA AAGCCTGAGT
  TCAAAACTTG GGGCTTGGGG TTCCAACCNA TGTGCTTTGA TCTGGAAAGC AGCAGCACCA
  AGCCCCCCCC CCAGAGCCTG TCTGCCTGGT CTCAGGGAGC CCATAAAGGT ATGACAGAGT
  GGGGAGTCCT GCACCTAGAC TGTAAGGACN GAGGTCTGAG ATTTCAGAAT AGAAGGACAT
  GCCGAATAAT                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8788420	WI_WGS_4_106181539	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6382264					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108288970 () rs orientation: forward

Symbol	Name	Function Class
Gm40223	predicted gene, 40223	within coordinates
Rr597185	regulatory region 597185	386 bp distal
Rr597186	regulatory region 597186	within coordinates
Rr597187	regulatory region 597187	1617 bp proximal
Tssr38291	transcription start site region 38291	391 bp downstream