rs6382200 SNP Detail

Summary

• ID
  rs6382200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59849903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTAGAGTA TAGTAACTTG
  TAATATACAT ATAACTTGTA ATCATATAGA GAAATAAGAT CTAAATAGTT ATATTTTTCT
  TTCTATATTG GACAGGCCTT GTAAGTTTTA CTATGTCTAG TCCATCTTCT AAAATAATCA
  GAGTTTGTCC CTTTTTCTTG TTTTCAGTAT ACATTTTAAG CTTTCTCACT TTTAACAAAA
  Y
  GAGAGCATGG AGTAGATGTG ACTGGATGTG TTCATGCTGT GGGCTAAAGC CATCTCCTGC
  ATGTCTCTCG CTGCTGTGTG AACTCTCTCC TGGGTGTGTT TTCTTGGGTT AAGTTGATGA
  GGTAATGCAG GCTTAAGGTT TCTTTTTTCT TTTTAGTTTG TTTACTCATG GCTGATGTGG
  TTATAACACA TGTCTGCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8788356	WI_WGS_4_58770388	WI	MOUSE	f	SNP							C		T
ss38009462	NES09421481	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T		C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6382200					SNP	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38009462	NES09421481	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59849903 () rs orientation: forward

Symbol	Name	Function Class
Rr376573	regulatory region 376573	within coordinates
Rr593160	regulatory region 593160	121 bp proximal
Rr593161	regulatory region 593161	513 bp proximal
Rr593162	regulatory region 593162	1337 bp proximal
Snx30	sorting nexin family member 30	Intron