rs6381811 SNP Detail

Summary

• ID
  rs6381811
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81484732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GCATGCAAAT
  AGTTTTAGTG CCTATGTTGA GGTGCTAAAA CGTGTTTAGT ACACTTGAAA ATATTTGCAT
  TGCAAAAGGA GAGTGAATCT CCTGAGGAAA ATCGAATTGA TATTTTGTAT TAAGAGACCA
  CTCTGGGTAC CGTGTGGTCT TCTTCTATGA AGAATTCTGT TTACAGTACA GCTAGCATTT
  TTAATTGACC TTTAGAAGAA AAGGTCTGGC AATAGCTTTG CCAACTTTAT AAACCGTTGG
  K
  CCATCTTCTG GCAACGTTCT TCACACGAAT CAGTGGGGCA GAGAGAGAAG GACGTTATCT
  AGNGGCTTTT GCTGGACTGT CACTTCTCNA GCCTCAGTTT GGTGGACTGG TAAGAGAACT
  CTGAAAATTA TAAACCCAGT TTCAGCTGGA ATGNGCCTAA CCAATTAGCT AACTAGCTAA
  CCAACTAGCT CAGGGAAGGC TTGCATGCAG GGGAGCAGCC GTGGTTGCCG GGCGTGAGGC
  CCCACACAGG                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8787967	WI_WGS_4_78856789	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6381811					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81484732 () rs orientation: forward

Symbol	Name	Function Class
Gm69809	predicted gene, 69809	23 bp upstream
Rr594239	regulatory region 594239	1583 bp distal
Rr594240	regulatory region 594240	1951 bp distal
Rr594241	regulatory region 594241	within coordinates