rs6381609 SNP Detail

Summary

• ID
  rs6381609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59849744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGGAGGT TTTCCATGGT
  TCTATGTGTG CCTTGGAATA CTTGACTAAG GCAGGCTTTG GGCTCCCTGG GGCTCAGCTG
  CAAACCTACT GGCCTAGGTG GTCGTTGTTT TCGGCCATGG GTCTGTCCTT TCTGTCACTG
  CCCAACTGTG GCTTTCTGGA CTTAGAGTAT AGTAACTTGT AATATACATA TAACTTGTAA
  Y
  CATATAGAGA AATAAGATCT AAATAGTTAT ATTTTTCTTT CTATATTGGA CAGGCCTTGT
  AAGTTTTACT ATGTCTAGTC CATCTTCTAA AATAATCAGA GTTTGTCCCT TTTTCTTGTT
  TTCAGTATAC ATTTTAAGCT TTCTCACTTT TAACAAAACG AGAGCATGGA GTAGATGTGA
  CTGGATGTGT TCATGCTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8787765	WI_WGS_4_58770229	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6381609					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59849744 () rs orientation: forward

Symbol	Name	Function Class
Rr376573	regulatory region 376573	within coordinates
Rr593160	regulatory region 593160	280 bp proximal
Rr593161	regulatory region 593161	672 bp proximal
Rr593162	regulatory region 593162	1496 bp proximal
Snx30	sorting nexin family member 30	Intron