rs6381467 SNP Detail

Summary

• ID
  rs6381467
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146050368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATCACACA ACATCAACAG
  TTGATTTCCC AGACCCAGAA GGACCCCTGG TCATTAGCAG AGTGGTCTTT GACAATGTTC
  CTCCCAACAG CGGGGATGGG CAGCCTTCAG GGGATTCGTG CTAGACTCGT CCTAATTAAG
  TGCCGAATGC TCTGATTCCT TTGCCCGTAG TTTCTTGTCC TCTGGGGTGA GTAATGATGG
  R
  ACACAAGTGT GTGCAACAGG CAGTCGGGGG TCACAGTACT GGCACGCAAT ATGGTGGCAG
  CAGATCACTG GGTGGACAAT GCCAGGAATG CAGGACTTGG CGAAAGCAGT TTCCAGGCCT
  GAGTGGATTA GAACCTAACT GACTTCCAAC TGCTTCTCGG GAACGCTTGG GTACAATGCA
  GTCACTCTTC CAGAATGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss8787623	WI_WGS_3_146877843	WI	MOUSE	f	SNP							G		A
ss47026594	NES10845635	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		A		G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs6381467					SNP	G	G	G	G	G	G	G	A	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026594	NES10845635	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146050368 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	672 bp proximal
Gm40167	predicted gene, 40167	1821 bp upstream
Rr587008	regulatory region 587008	574 bp distal
Rr587009	regulatory region 587009	779 bp distal
Rr587010	regulatory region 587010	478 bp proximal
Rr587011	regulatory region 587011	784 bp proximal