rs6381415 SNP Detail

Summary

• ID
  rs6381415
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146050337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATAACAC TTCCACCTCT
  TACAGTGTCC TACATCACAC AACATCAACA GTTGATTTCC CAGACCCAGA AGGACCCCTG
  GTCATTAGCA GAGTGGTCTT TGACAATGTT CCTCCCAACA GCGGGGATGG GCAGCCTTCA
  GGGGATTCGT GCTAGACTCG TCCTAATTAA GTGCCGAATG CTCTGATTCC TTTGCCCGTA
  S
  TTTCTTGTCC TCTGGGGTGA GTAATGATGG GACACAAGTG TGTGCAACAG GCAGTCGGGG
  GTCACAGTAC TGGCACGCAA TATGGTGGCA GCAGATCACT GGGTGGACAA TGCCAGGAAT
  GCAGGACTTG GCGAAAGCAG TTTCCAGGCC TGAGTGGATT AGAACCTAAC TGACTTCCAA
  CTGCTTCTCG GGAACGCTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss8787571	WI_WGS_3_146877812	WI	MOUSE	f	SNP							G		C
ss47026592	NES10845634	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		C		G	G	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs6381415					SNP	G	G	G	G	G	G	G	C	C	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026592	NES10845634	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146050337 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	703 bp proximal
Gm40167	predicted gene, 40167	1852 bp upstream
Rr587008	regulatory region 587008	543 bp distal
Rr587009	regulatory region 587009	748 bp distal
Rr587010	regulatory region 587010	509 bp proximal
Rr587011	regulatory region 587011	815 bp proximal