rs6381277 SNP Detail

Summary

• ID
  rs6381277
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19318542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTGTTGC TCAGCAAACA
  GCAGTGTTAT AAGTCTTAAC AGAGAGACAA AAGGAGCTGC ATGGTAAATG AAAGATAGAA
  CCATTTCTAT GAACGTATAG AAAATAATTT CAAATAGTGT CAACTTAAGT GTCTTTGGCT
  TCAGGCTCAG GCTTACACAC TATCAAGAAT TTCTCAACTG AATTTAACTT CAAAACAACA
  S
  CTTATAAGTA TATTTTTGTG AATGTATTTT AGCTATACTC CAAGAGAAAA ACAGGGAACA
  TACAACAGGA TGGGTTTTGT TTTATAAAGC TTGGCATTGT TTAGAATACC CTCAATAATT
  ATACTTTACA CATATAAATG TCAGTCAACC CTTTTCTCTA AAAGAAAATA TCTAAGACAC
  AAATACTCAA AAGTCTGGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8787433	WI_WGS_3_18996753	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6381277					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19318542 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde7a	phosphodiesterase 7A			Intron
				Noncoding-Transcript-Variant
Rr573966	regulatory region 573966			577 bp distal
Rr573967	regulatory region 573967			577 bp proximal
Tssr32690	transcription start site region 32690			549 bp downstream
Tssr32691	transcription start site region 32691			581 bp downstream
Tssr32692	transcription start site region 32692			619 bp downstream
Tssr32693	transcription start site region 32693			629 bp downstream
Tssr32694	transcription start site region 32694			718 bp downstream