rs6381017 SNP Detail

Summary

• ID
  rs6381017
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106643016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCCACTG CCCACCCCCC
  AAACCCCCCA ACCTTTACCC CCCCCCCCAG TCACCAGAAG GCCTAGAGGG CAACTAGAAT
  GTTTTGATCA CAAGCCGTCT AGCCCCAGTG TGATCTTACC CTCCATGTGC CACACCCAGC
  CCCAAACCCC CAGTGACATG CATTGATCCC TCCATGCTGA GCCCTCACAC TGAGGTCGGG
  K
  CTGCCACTCA GGGGGCTGTG AAGGAAAGAC CTGGCTTCTC CCCATCAGAA CCCTTCACAC
  CCTCCCCACC ACATGGCTAA GAATGCAGCC TGTCCCTGCC TCTGGGTTAC CATGGCAACA
  AGAAGCCAGG CAGTGGGCCC AGGCCCTGCT ATCCTACAAG CCACCTCATT TACCCTGGAG
  CTGGGCACAG CAGCCATAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8787173	WI_WGS_4_104502645	WI	MOUSE	f	SNP	G	T
ss321247216	CHEV_4_106458424	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6381017					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106643016 () rs orientation: forward

Symbol	Name	Function Class
Acot11	acyl-CoA thioesterase 11	Intron
Rr596808	regulatory region 596808	within coordinates
Rr596809	regulatory region 596809	1723 bp proximal
Rr596810	regulatory region 596810	1734 bp proximal